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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Johan Carinho | 14th | Tied for 15th | 18th | |
| First Basemen | Victor Martinez | 14th | Tied for 16th | 18th | |
| Second Basemen | Tony Pena | 2nd | Oscar Rivera | Tied for 2nd | 1st |
| Third Basemen | Ryan Lietz | 16th | Ryan Lietz | 2nd | 2nd |
| Shortstops | Tony Davila | 8th | Jason Van Kirk | 5th | 4th |
| Left Fielders | Aaron Pearce | 10th | Mike Gillikin | 4th | 2nd |
| Center Fielders | Kevin Florkowski | 8th | Willie Padilla | 2nd | 3rd |
| Right Fielders | Mike Scarborough | 7th | David Taylor | 5th | 3rd |
| Starting Pitchers | Brian Gordon | 4th | Jose Cruz | 16th | 13th |
| Relievers | Ryan Keller | 18th | Ryan Keller | 7th | 18th |
| Closers | Justin Faul | 11th | Jose Cruz | Tied for 4th | 6th |
